marbl/CHM13 resource

Health v2 · maintenance only

Flags: no_releases no_license

Adoption not part of the score

1054 stars · 103 forks observed · 2026-08-28

What it is AI-extracted, prompt v1, taxonomy v1, 2026-08-30, confidence not recorded

The Telomere-to-Telomere (T2T) consortium's complete telomere-to-telomere assembly of the CHM13hTERT human cell line, including the T2T-CHM13v2.0 release with a finished chromosome Y. The repository distributes assembly FASTA files, raw sequencing datasets (PacBio HiFi, Oxford Nanopore, 10X, BioNano, Hi-C), and UCSC genome browser hubs.

Use cases

• download a complete telomere-to-telomere human reference genome
• get raw PacBio HiFi and Nanopore reads for the CHM13 cell line
• use T2T-CHM13 as a reference for read alignment and variant calling
• view the T2T assembly in the UCSC genome browser
• study human centromeres and repetitive regions missing from GRCh38
• access a complete human chromosome Y sequence

When to choose

• you need the most complete human reference genome including repetitive and centromeric regions
• you want raw long-read sequencing data for the CHM13 cell line
• you are benchmarking assemblers or aligners against a gapless human reference

When to avoid

• you need a clinical reference genome with broad annotation support - GRCh38 remains the standard
• you want software or analysis pipelines rather than data
• you need a diploid or diverse pangenome reference - consider the Human Pangenome Reference Consortium instead

Facets

dataset · maturity stable

data-generation bioinformatics healthcare cross-platform genomics genome-assembly telomere-to-telomere reference-genome human-genome chm13 sequencing-data bioinformatics

Member repositories

For agents

markdown · JSON · MCP: product_card(name="marbl/CHM13")