Open-source healthcare software
223 open-source libraries, tools and applications tagged healthcare, ranked by how closely healthcare is their primary purpose, then by adoption and maintenance health. Each entry links to a page with sources, use cases and when to choose or avoid it.
223 products, primary matches first, then adoption-weighted; health v2 shown.
| Product | Health v2 | Stars | Maturity |
|---|---|---|---|
| meditohq/medito-app Medito is a 100% free, open-source meditation and mindfulness app built with Flutter, maintained by the Medito Foundation. It offers guided… | 66 | 1316 | active |
| SOFA Framework SOFA is an open-source C++ framework for interactive, real-time multi-physics simulation based on the Finite Element Method, with an emphas… | 84 | 1278 | active |
| microsoft/BioGPT BioGPT is Microsoft's domain-specific generative Transformer language model pre-trained on biomedical text, with implementation code and pr… | 10 | 4491 | maintenance |
| Taxuspt/garmin_mcp A Model Context Protocol (MCP) server that connects to Garmin Connect and exposes fitness and health data (activities, sleep, heart rate, t… | 67 | 1260 | active |
| Planshit/ProjectEye Project Eye is a Windows desktop application that reminds users to rest their eyes based on the 20-20-20 rule, showing full-screen break pr… | 23 | 1250 | active |
| bowang-lab/MedRAX MedRAX is a medical reasoning agent framework that integrates chest X-ray analysis tools (segmentation, grounding, report generation, disea… | 40 | 1241 | active |
| OpenTSLM/OpenTSLM OpenTSLM is a family of Time-Series Language Models that integrate time series as a native modality into pretrained LLMs (Llama, Gemma), en… | 58 | 1230 | active |
| Project-MONAI/research-contributions A collection of peer-reviewed research prototype implementations built on the MONAI framework for medical imaging AI. It serves as a fast-t… | 39 | 1225 | active |
| Fellow Oak DICOM Fellow Oak DICOM (fo-dicom) is a C#/.NET library implementing the DICOM standard for medical imaging, including parsing, image codecs, anon… | 84 | 1216 | active |
| ddsjoberg/gtsummary gtsummary is an R package for creating publication-ready summary and analytic result tables from data frames and regression models. It is w… | 90 | 1215 | stable |
| ubicomplab/rPPG-Toolbox rPPG-Toolbox is an open-source Python toolbox for camera-based physiological sensing (remote photoplethysmography), enabling heart rate and… | 48 | 1214 | active |
| Mirth Connect Mirth Connect by NextGen Healthcare is an open-source healthcare integration engine that filters, transforms, extracts, and routes messages… | 66 | 1203 | active |
| mlmed/torchxrayvision TorchXRayVision is an open-source PyTorch library providing pre-trained deep learning models and a unified interface for publicly available… | 89 | 1197 | active |
| rordenlab/dcm2niix dcm2niix is a command-line tool that converts neuroimaging data from the DICOM format to the NIfTI format, including generation of BIDS-com… | 89 | 1193 | active |
| MediaBrain-SJTU/MING MING (明医) is a Chinese medical consultation large language model fine-tuned on medical instruction data, with variants built on bloomz-7b a… | 37 | 1181 | active |
| nightscout/AndroidAPS AndroidAPS is an open-source automated insulin delivery (closed loop) system for people with type 1 diabetes, running on Android smartphone… | 94 | 1178 | active |
| Open Food Facts Smooth App is the official Open Food Facts mobile application for Android and iOS, built with Flutter and Dart. It lets users scan food pro… | 95 | 1176 | active |
| SuperBruceJia/EEG-DL EEG-DL is a deep learning library built on TensorFlow for classifying EEG signals, supporting many architectures including CNNs, RNNs, GCNs… | 43 | 1171 | active |
| agencyenterprise/react-native-health A React Native library providing a JavaScript bridge to Apple HealthKit on iOS. It lets React Native apps read and write health and fitness… | 55 | 1164 | active |
| JunMa11/SegLossOdyssey A curated collection of loss functions for medical image segmentation, accompanying the 'Loss Odyssey in Medical Image Segmentation' survey… | 32 | 4005 | maintenance |
| paulvangentcom/heartrate_analysis_python HeartPy is a Python library for analyzing heart rate from PPG (photoplethysmography) and ECG signals, including noisy and low-resolution we… | 46 | 1143 | active |
| OpenGVLab/SAM-Med2D Official implementation of SAM-Med2D, a fine-tuned Segment Anything Model (SAM) for 2D medical image segmentation, trained on the SA-Med2D-… | 29 | 1137 | active |
| OpenSim OpenSim Core is a C++ library and set of command-line applications for building musculoskeletal models and running dynamic simulations of m… | 82 | 1119 | stable |
| PharMolix/OpenBioMed OpenBioMed is an open-source toolkit and agent platform for biomedicine and life science, offering multimodal models like BioMedGPT-Mol, 45… | 69 | 1104 | active |
| SimpleITK/SimpleITK SimpleITK is a simplified C++ interface to the Insight Toolkit (ITK) for multi-dimensional image analysis, including filtering, segmentatio… | 96 | 1092 | stable |
| OHDSI/CommonDataModel An R package and repository defining the OMOP Common Data Model (CDM), providing SQL DDL scripts and tools to generate or instantiate CDM t… | 93 | 1085 | active |
| suyashkumar/dicom A high-performance, native Go library for parsing, reading, and writing DICOM medical image files, with channel-based streaming of frames a… | 60 | 1085 | stable |
| HannesStark/boltzgen BoltzGen is an open-source all-atom generative diffusion model for designing protein and peptide binders against arbitrary biomolecular tar… | 75 | 1081 | active |
| ccsb-scripps/AutoDock-Vina AutoDock Vina is an open-source molecular docking engine used for predicting how small molecules bind to protein targets. It supports fast … | 70 | 1081 | active |
| BHznJNs/MotionEaseTune MotionEaseTune is a simple mobile application that helps prevent motion sickness by playing a 100Hz pure tone sound to the user for about o… | 54 | 1069 | active |
| NeuroTechX/moabb MOABB (Mother of All BCI Benchmarks) is a Python library for reproducible benchmarking of machine-learning algorithms on EEG-based brain-co… | 97 | 1060 | active |
| allenv0/AirPosture AirPosture is an open-source iOS app that turns AirPods (and compatible Beats) with dynamic head tracking into a real-time posture coach, s… | 63 | 1057 | active |
| wu-yc/LabClaw LabClaw is a modular library of 240 SKILL.md agent skills for biomedical AI research, covering biology, drug discovery, medicine, data scie… | 45 | 1053 | active |
| cBioPortal cBioPortal is an open-source web application for visualization, analysis, and download of large-scale cancer genomics datasets. This reposi… | 92 | 1048 | active |
| Xiaoqi-Zhao-DLUT/MSNet-M2SNet Official PyTorch implementations of MSNet and M2SNet, multi-scale subtraction networks for medical image segmentation such as polyp, lung i… | 70 | 1039 | active |
| trynoice/android-app Noice is an open-source Android app for mixing ambient background sounds like rain, wind, and white noise at custom volume levels. It helps… | 23 | 1034 | active |
| bowang-lab/U-Mamba U-Mamba is a hybrid CNN-state-space-model (Mamba) network for biomedical image segmentation, built on top of the nnU-Net framework. It comb… | 27 | 1025 | active |
| zatosource/zato Zato is a Python-based open-source platform for ESB, SOA, REST API integration, and cloud orchestration. It lets teams automate, integrate,… | 77 | 1015 | active |
| ZJUI-AI4H/Hulu-Med Hulu-Med is a family of open-source transparent generalist medical vision-language models ranging from 4B to 235B parameters, covering text… | 59 | 1006 | active |
| WangRongsheng/CareGPT CareGPT is a medical large language model project that aggregates dozens of publicly available medical fine-tuning datasets and open medica… | 10 | 999 | active |
| govind-codex/healthconnect Health Connect is a React 19 + TypeScript web application for discovering health camps, medical checkups, emergency services, and healthcar… | 55 | 985 | active |
| thearn/webcam-pulse-detector A Python desktop application that estimates a person's heart rate in real time using only a webcam, by analyzing subtle color intensity cha… | 38 | 3232 | maintenance |
| xflux-gui/fluxgui Fluxgui is an open-source Python GUI indicator applet for Linux that controls screen color temperature via the xflux or Redshift backends, … | 73 | 2916 | maintenance |
| nic-delhi/AarogyaSetu_Android The open-source native Android code of Aarogya Setu, the Government of India's COVID-19 contact-tracing mobile application. It uses Bluetoo… | 32 | 2902 | maintenance |
| ShawnBIT/UNet-family A curated collection of UNet-family semantic segmentation models with PyTorch implementations and links to original papers and third-party … | 32 | 2592 | maintenance |
| Tencent/MedicalNet MedicalNet provides a series of 3D-ResNet pre-trained models trained on 23 diverse medical imaging datasets, with PyTorch transfer-learning… | 53 | 2269 | maintenance |
| BioBERT BioBERT is a pre-trained biomedical language representation model (based on BERT) with code for fine-tuning it on biomedical text mining ta… | 32 | 2213 | maintenance |
| epfLLM/meditron Meditron is a suite of open-source medical large language models (7B and 70B) adapted from Llama-2 via continued pretraining on a curated m… | 27 | 2211 | maintenance |
| ozan-oktay/Attention-Gated-Networks A PyTorch implementation of attention gates for convolutional neural networks, applied to U-Net and VGG-16 architectures. It targets medica… | 32 | 2065 | maintenance |
| black0017/MedicalZooPytorch A PyTorch-based open-source library implementing state-of-the-art 3D (and some 2D) deep neural networks for multi-modal medical image segme… | 32 | 1920 | maintenance |
| ahmadawais/corona-cli A Node.js command-line tool for tracking COVID-19 statistics worldwide, per country, and for US states, with sorting and bar/line chart out… | 49 | 1835 | maintenance |
| fossasia/neurolab-android Neurolab Android is the companion Android app for the FOSSASIA Neurolab open-hardware EEG headband, which measures brain waves via a smartp… | 10 | 1711 | maintenance |
| KikiLetGo/VirusBroadcast A Java-based simulation program that models virus broadcast/epidemic spread among a population. It was built quickly during the early COVID… | 32 | 1667 | maintenance |
| ZainZhao/HIS HIS (Hospital Information System) is a hospital management demo application covering clinical care, pharmacy, billing, and patient manageme… | 32 | 1635 | maintenance |
| linglongxin24/DylanStepCount An open-source Android pedometer app that accurately counts steps using the hardware step counter and step detector sensors, with an algori… | 32 | 1575 | maintenance |
| ExpDev07/coronavirus-tracker-api A fast REST API built with Python and FastAPI that provides up-to-date global COVID-19 statistics including confirmed cases, deaths, and re… | 23 | 1568 | maintenance |
| vlawhern/arl-eegmodels A collection of well-validated convolutional neural network models (EEGNet, DeepConvNet, ShallowConvNet) for EEG signal classification, imp… | 32 | 1565 | maintenance |
| mhdhejazi/CoronaTracker A native iOS and macOS app for tracking COVID-19 statistics with interactive distribution maps and multiple chart types, built in Swift. It… | 23 | 1539 | maintenance |
| king-yyf/CMeKG_tools A collection of pretrained models and Python code for the Chinese Medical Knowledge Graph (CMeKG), providing medical text segmentation, med… | 32 | 1505 | maintenance |
| DLTK DLTK is a Python neural networks toolkit built on TensorFlow for deep learning on medical images. It provides reference model implementatio… | 32 | 1460 | maintenance |
| fossasia/neurolab-firmware Firmware for the FOSSASIA Neurolab open-hardware neuroheadset, an EEG headband that measures brainwave signals from the forehead and connec… | 10 | 1460 | maintenance |
| j4velin/Pedometer A lightweight, open-source pedometer app for Android that counts steps using the device's hardware step sensor for minimal battery consumpt… | 99 | 1432 | maintenance |
| zhihao-chen/QASystemOnMedicalGraph A medical-domain knowledge graph question answering system built in Python with Neo4j, containing ~37k entities and ~210k relations scraped… | 32 | 1428 | maintenance |
| neherlab/covid19_scenarios A web application for modeling COVID-19 outbreak trajectories and hospital demand using epidemiological simulation. It provides an interact… | 23 | 1351 | maintenance |
| FreedomIntelligence/HuatuoGPT HuatuoGPT is an open Chinese medical large language model (7B and 13B variants) fine-tuned on a hybrid of distilled and real-world medical … | 30 | 1333 | maintenance |
| lfz/DSB2017 The winning solution of team 'grt123' for the 2017 Data Science Bowl (DSB2017), a deep learning pipeline for detecting lung cancer from CT … | 32 | 1242 | maintenance |
| mrc-ide/covid-sim CovidSim is a C++ microsimulation model of COVID-19 transmission developed by Imperial College London's MRC Centre for Global Infectious Di… | 32 | 1234 | maintenance |
| kexinhuang12345/DeepPurpose DeepPurpose is a PyTorch-based deep learning library for molecular modeling, supporting drug-target interaction (DTI), drug property, drug-… | 23 | 1197 | maintenance |
| jiahongfei/TodayStepCounter An Android step-counting library that records the day's steps from 00:00 to 23:59, similar to WeChat Sports or Alipay step tracking. It run… | 32 | 1175 | maintenance |
| Cornerstone.js Cornerstone Core is a lightweight JavaScript library for displaying medical images in modern web browsers using the HTML5 canvas element. I… | 95 | 1152 | maintenance |
| WangRongsheng/XrayGLM XrayGLM is the first Chinese multimodal medical large language model that generates radiology report summaries from chest X-ray images, bui… | 30 | 1086 | maintenance |
| deepmedic/deepmedic DeepMedic is an efficient multi-scale 3D convolutional neural network for segmenting 3D medical scans such as MRI and CT. It is a Python-ba… | 23 | 1066 | maintenance |
| mpplab/mnssp3 MNSSp3 is a privacy protection sharing platform for medical big data, built on the Malleable Network System Simulator (MNSS) platform. It a… | 32 | 1036 | maintenance |
| llSourcell/Doctor-Dignity Doctor Dignity is a fine-tuned Llama2 7B model that can pass the US Medical Licensing Exam, built with PyTorch, Transformers, TRL, and ONNX… | 29 | 3809 | experimental |
| b-nnett/goose Goose is a local-first iOS companion app for WHOOP 5.0 fitness bands, built with SwiftUI and a Rust core that parses Bluetooth packet data … | 10 | 2722 | experimental |
| Loop Loop is an open-source iOS app template for building an automated insulin delivery (AID) system for people with type 1 diabetes. It integra… | 68 | 1747 | experimental |
| Wuhan2020 Platform A volunteer-built information collection platform for the 2020 Wuhan COVID-19 outbreak, aggregating data on hospitals, hotels, logistics, d… | 32 | 5910 | abandoned |
| Exposure Notifications Server Google's open-source reference implementation of the COVID-19 Exposure Notifications key server, written in Go. It accepts, validates, stor… | 10 | 2585 | abandoned |
| Corona-Warn-App The official open-source COVID-19 exposure notification app for Germany, developed by SAP and Deutsche Telekom for iOS and Android using th… | 10 | 2396 | abandoned |
| Flaque/quirk Quirk is an open-source Cognitive Behavioral Therapy (CBT) mobile app for iOS and Android, built with React Native and Expo, designed to he… | 32 | 2277 | abandoned |
| lyrric/seckill A Java-based automation script for snatching scarce HPV 9-valent (Gardasil 9) vaccine appointment slots on the Chinese Miaomiao/Yuemiao boo… | 10 | 1942 | abandoned |
| jcl5m1/ventilator An open-source project documenting how to convert a low-cost CPAP blower into a rudimentary non-invasive pressure support ventilator or a P… | 32 | 1665 | abandoned |
| OpnTec/bodyapps-android An Android application from the #bodyapps project for creating, storing, and syncing human body measurement records, including images and n… | 32 | 1400 | abandoned |
| NiftyNet NiftyNet is a TensorFlow-based open-source convolutional neural networks platform for research in medical image analysis and image-guided t… | 10 | 1374 | abandoned |
| MIC-DKFZ/medicaldetectiontoolkit A PyTorch framework providing 2D and 3D implementations of object detectors like Mask R-CNN, Retina Net, and Retina U-Net, tailored for med… | 32 | 1359 | abandoned |
| mathdroid/covid-19-api A JSON API service serving global COVID-19 data sourced from Johns Hopkins University CSSE, built with TypeScript for the ZEIT Now (Vercel)… | 23 | 1351 | abandoned |
| YeYzheng/KGQA-Based-On-medicine A knowledge graph question answering (KGQA) system for medicine that parses natural language questions into SPARQL queries against an Apach… | 32 | 1279 | abandoned |
| putianxi/putianxi.github.io A Vue.js-based static website that maps and lists Putian-system hospitals across China to raise public awareness of their risks. It renders… | 23 | 1235 | abandoned |
| covidpass-org/covidpass CovidPass is a web application that converts EU Digital COVID Certificates (PDF or QR code screenshots) into wallet passes for Apple Wallet… | 23 | 1158 | abandoned |
| FancyPixel/gulps Gulps is an open-source iOS and Apple Watch app for tracking daily water consumption, letting users set goals and log intake via the app or… | 10 | 1059 | abandoned |
| iBreaker/bjguahao A Python-based helper script for booking appointments on the Beijing unified hospital registration platform (北京市预约挂号统一平台). The source code … | 32 | 1056 | abandoned |
| OpenMined/PySyft PySyft is a Python library that lets data scientists run computations on private data that stays on the data owner's server, with results s… | 73 | 10034 | active |
| open-mmlab/mmsegmentation MMSegmentation is a PyTorch-based toolbox and benchmark for semantic segmentation, part of the OpenMMLab ecosystem. It provides implementat… | 23 | 9956 | stable |
| PaddlePaddle/PaddleSeg PaddleSeg is an end-to-end image segmentation toolkit built on PaddlePaddle, offering a model zoo with dozens of pre-trained models for sem… | 49 | 9395 | active |
| DeepChem DeepChem is a Python library that democratizes deep learning for drug discovery, quantum chemistry, materials science, and biology. It prov… | 63 | 7050 | active |
| AidLux (AidLearning) AidLux (originally AidLearning) is an AIoT development platform that runs a native Ubuntu Linux environment with GUI, deep learning tooling… | 63 | 5812 | active |
| DeepLabCut DeepLabCut is an open-source Python toolbox for markerless 2D and 3D pose estimation of user-defined body parts using deep neural networks … | 94 | 5784 | stable |
| Easy!Appointments Easy!Appointments is a self-hosted, open-source online appointment scheduling platform built with PHP and JavaScript. It lets businesses ma… | 80 | 4417 | stable |
| arpanghosh8453/garmin-grafana A Dockerized Python application that fetches health and fitness data from Garmin Connect servers and stores it in a local InfluxDB time-ser… | 73 | 3481 | active |
| wolny/pytorch-3dunet A PyTorch implementation of 3D U-Net and its variants (residual, squeeze-and-excitation) for volumetric semantic segmentation, with 2D U-Ne… | 57 | 2423 | active |