crazyhottommy/RNA-seq-analysis resource

Health v2 · maintenance only

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1096 stars · 327 forks observed · 2026-08-28

What it is AI-extracted, prompt v1, taxonomy v1, 2026-08-30, confidence not recorded

A curated collection of notes, tutorials, and links for RNA-seq data analysis maintained by Ming Tang. It aggregates external resources covering sequencing QC, file formats, differential expression, and pathway analysis workflows.

Use cases

• learn RNA-seq analysis from scratch
• find tutorials for differential expression with DESeq2
• understand RNA-seq file formats and QC
• find pathway analysis resources for gene expression
• get started with Snakemake pipelines for RNA-seq
• locate bioinformatics training courses

When to choose

• you are learning RNA-seq analysis and want a curated reading list
• you need pointers to established tutorials like kallisto/sleuth or data carpentry
• you want community-vetted best-practice references for transcriptomics

When to avoid

• you need a ready-to-run production RNA-seq pipeline rather than learning materials
• you need actively maintained software with support
• you need single-cell or proteomics-specific guidance beyond the linked resources

Facets

learning-resource · maturity maintenance

documentation developer-tools bioinformatics tutorials data-science python cli rna-seq bioinformatics snakemake genomics differential-expression notes

Member repositories

For agents

markdown · JSON · MCP: product_card(name="crazyhottommy/RNA-seq-analysis")