qupath/qupath
QuPath - Open-source bioimage analysis for research observed · 2026-08-28
Health v2 · maintenance only
79/100
- Activity 99
- Release rhythm 40
- Longevity 100
How is this computed?
round(0.45*activity + 0.35*rhythm + 0.20*longevity); archived -> min(score, 10) — computed 2026-09-02. Adoption (stars, forks) is never an input.
- gap_med: 248
- age_days: 3657
- days_rel: 184
- days_push: 11
- n_releases_24m: 2
Adoption not part of the score
1430 stars · 359 forks observed · 2026-08-28
What it is AI-extracted, prompt v1, taxonomy v1, 2026-08-30, confidence not recorded
QuPath is an open-source desktop application for bioimage analysis, aimed especially at digital pathology and whole-slide imaging. It provides annotation tools, cell segmentation, interactive machine learning classification, and scripting for batch processing and integration with tools like ImageJ.
Use cases
- analyze whole slide images from digital pathology scans
- segment and count cells in microscopy images
- train interactive classifiers to label tissue regions
- dearray tissue microarrays automatically
- batch-process large sets of bioimages with Groovy scripts
- view and annotate large whole-slide images
- integrate image analysis workflows with ImageJ
When to choose
- you need to analyze histology or pathology whole-slide images
- you want an interactive GUI for annotating and classifying bioimages
- you need cell segmentation or tissue microarray analysis out of the box
- you want scriptable, reproducible bioimage analysis workflows
When to avoid
- you need a headless server-side image pipeline rather than a desktop GUI
- your images are not biological/medical microscopy images
- you require a permissive license for commercial use (GPLv3, research-use intent)
- you need general-purpose photo editing rather than scientific image analysis
Facets
application · maturity active
image-processing machine-learning computer-vision gui data-visualization bioinformatics healthcare image-processing computer-vision machine-learning windows cross-platform bioimage-analysis digital-pathology whole-slide-imaging cell-segmentation histology imagej javafx research-software macos linux desktop
2 sources
- readme: https://github.com/qupath/qupath · fetched 2026-08-28 · 0c9d781f80c9
- homepage: https://qupath.github.io · fetched 2026-08-29 · ad39d3f2ab79
Member repositories
| Repository | Role | Health v2 |
|---|---|---|
| qupath/qupath | main | 79 |
For agents
Data as of 2026-08-30T08:39:29.467469+00:00 · Report a problem