schrodinger/pymol-open-source

Health v2 · maintenance only

Flags: no_releases no_license

Adoption not part of the score

1733 stars · 387 forks observed · 2026-08-28

What it is AI-extracted, prompt v1, taxonomy v1, 2026-08-30, confidence not recorded

The open-source foundation of PyMOL, a molecular visualization system for rendering and analyzing 3D structures of proteins, nucleic acids, and small molecules. It is maintained by Schrödinger and serves as the basis for the commercial Incentive PyMOL product.

Use cases

• visualize protein 3D structures
• render molecular models for publications
• analyze pdb files interactively
• create animations of molecular structures
• script molecular visualization with python
• inspect ligand binding sites

When to choose

• you need a scriptable, Python-extensible molecular graphics tool
• you want a free, permissively licensed alternative to commercial molecular viewers
• you work with PDB structures in structural biology or computational chemistry

When to avoid

• you need vendor support, maintenance, and the latest commercial features
• you require a turnkey installer experience without building from source or using conda
• your use case is general 3D graphics rather than molecular structures

Facets

application · maturity active

graphics data-visualization gui sdk chemistry bioinformatics data-visualization cross-platform windows python cpp molecular-visualization structural-biology 3d-rendering protein-structure open-core science linux macos

Member repositories

For agents

markdown · JSON · MCP: product_card(name="schrodinger/pymol-open-source")