GPTomics/bioSkills resource

Health v2 · maintenance only

Flags: archived

Adoption not part of the score

1193 stars · 213 forks observed · 2026-08-28

What it is AI-extracted, prompt v1, taxonomy v1, 2026-08-30, confidence not recorded

A collection of SKILLS.md files that give AI coding agents (Claude Code, Codex, Gemini, etc.) expert knowledge for bioinformatics workflows, from sequence manipulation to single-cell RNA-seq and variant calling. It includes installers for various agent CLIs and is evaluated against the Bio-Task Bench dataset.

Use cases

• teach claude code how to write bioinformatics code
• help an AI agent run single-cell RNA-seq analysis
• guide agents through variant calling workflows
• get idiomatic pysam and biopython code from an LLM
• install domain expertise skills into coding agents
• improve agent accuracy on computational biology tasks

When to choose

• you use AI coding agents for genomics or computational biology work
• you want curated best-practice patterns for bioinformatics libraries like DESeq2, Seurat, or pysam
• you want a benchmarked starting point for agent skills you can fork and customize

When to avoid

• you need actively maintained skills with bug fixes (the repo is archived)
• your domain is outside bioinformatics
• you want a runtime library rather than prompt/skill files

Facets

learning-resource · maturity abandoned

developer-tools documentation sdk bioinformatics artificial-intelligence developer-tools education python cli cross-platform agent-skills claude-code bioinformatics skills-md prompting archived ai-agents

Member repositories

For agents

markdown · JSON · MCP: product_card(name="GPTomics/bioSkills")