# sib-swiss/training-collection

Collection of bioinformatics training materials

Repository: https://github.com/sib-swiss/training-collection
Canonical: https://ross.abutalabs.com/products/training-collection
Language: Python
License: NOASSERTION
License Family: other
Last push: 2026-08-30T04:30:51+00:00

## Health v2 (maintenance only)
Score: 68/100 (v2, computed 2026-09-02T17:46:02.011165+00:00)
- activity 100, release rhythm 8, longevity 100
- inputs: {"age_days": 1724, "days_push": 3, "days_rel": null, "gap_med": null, "n_releases_24m": 0}
- flags: no_license
- formula: round(0.45*activity + 0.35*rhythm + 0.20*longevity); archived -> min(score, 10)

## Adoption (not part of the score)
Stars 1146, forks 200 (observed 2026-09-01T02:14:06.735896+00:00)

## What it is
A curated collection of free, open bioinformatics training materials hosted on GitHub or GitLab, maintained by the SIB Swiss Institute of Bioinformatics. It covers scripting languages, computational pipelines, omics analysis, reproducibility, statistics, and machine learning topics.

## Use cases
- find free bioinformatics training courses
- learn RNA-seq analysis from tutorials
- learn Nextflow or Snakemake workflow training
- find single-cell sequencing learning materials
- learn Python or R for bioinformatics
- find genomics and metagenomics tutorials
- learn reproducible data management in bioinformatics

## When to choose
- you want a curated index of free, markdown-based bioinformatics courses
- you are a student or researcher looking for self-paced training in omics analysis
- you need pointers to tutorials on pipelines like Galaxy, Nextflow, or Snakemake

## When to avoid
- you need quality-vetted or peer-reviewed course content - the list explicitly performs no quality checks
- you want an interactive learning platform rather than links to repositories
- you need training materials outside bioinformatics

## Facets
- artifact type: learning-resource
- maturity: active
- function: documentation, developer-tools
- domain: bioinformatics, tutorials, education, data-science
- platform: cross-platform
- tags: awesome-list, training-materials, omics, genomics, curated-list

## Member repositories
- sib-swiss/training-collection (main) score 68

## Provenance
- Observed fields: from GitHub, fetched 2026-09-01T02:14:06.735896+00:00.
- Health v2: computed from the inputs above; adoption is never an input.
- Inferred fields (summary, facets, guidance): AI-extracted, prompt v1, taxonomy v1, on 2026-08-30T06:34:40.727761+00:00, confidence not recorded.
  - readme: https://github.com/sib-swiss/training-collection (fetched 2026-09-01T02:14:06.735896+00:00, sha 87f6b06a2cb2)
- Data as of 2026-08-30T08:39:29.467469+00:00.