# CJ-Chen/TBtools-II

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

Repository: https://github.com/CJ-Chen/TBtools-II
Canonical: https://ross.abutalabs.com/products/tbtools-ii
Language: Shell
License Family: other
Last push: 2026-08-03T01:15:16+00:00

## Health v2 (maintenance only)
Score: 92/100 (v2, computed 2026-09-03T02:20:16.233290+00:00)
- activity 95, release rhythm 84, longevity 100
- inputs: {"age_days": 3799, "days_push": 31, "days_rel": 31, "gap_med": 34, "n_releases_24m": 18}
- flags: no_license
- formula: round(0.45*activity + 0.35*rhythm + 0.20*longevity); archived -> min(score, 10)

## Adoption (not part of the score)
Stars 1074, forks 197 (observed 2026-08-28T04:03:28.992787+00:00)

## What it is
TBtools-II is a stand-alone bioinformatics platform with a user-friendly GUI and command-line tools for analyzing high-throughput sequencing (NGS) data. It bundles a large collection of functions for bulk sequence processing, enrichment analysis, and interactive biological data visualization.

## Use cases
- analyze ngs sequencing data without coding
- draw heatmaps and venn diagrams for gene data
- bulk extract sequences from fasta files
- run gene set enrichment analysis
- visualize comparative genomics data
- bioinformatics toolkit for wet-lab biologists

## When to choose
- you are a biologist without programming experience who needs to analyze sequencing data
- you want one integrated tool for routine bioinformatics tasks and plotting
- you need a cross-platform tool that runs anywhere Java runs

## When to avoid
- you need a scriptable, pipeline-oriented workflow for large-scale production analysis
- you require an open-source license for commercial use (license is non-commercial)
- you need cutting-edge specialized pipelines better served by dedicated tools

## Facets
- artifact type: application
- maturity: active
- function: data-visualization, nlp, parser, developer-tools
- domain: bioinformatics, data-science, data-visualization
- platform: cross-platform, windows, cli
- tags: bioinformatics, ngs, genomics, gui, java, sequence-analysis, heatmap, gene-set-enrichment, macos, linux

## Member repositories
- CJ-Chen/TBtools-II (main) score 92

## Provenance
- Observed fields: from GitHub, fetched 2026-08-28T04:03:28.992787+00:00.
- Health v2: computed from the inputs above; adoption is never an input.
- Inferred fields (summary, facets, guidance): AI-extracted, prompt v1, taxonomy v1, on 2026-08-30T06:53:29.452710+00:00, confidence not recorded.
  - readme: https://github.com/CJ-Chen/TBtools-II (fetched 2026-08-28T04:03:28.992787+00:00, sha dbc97b0913d7)
- Data as of 2026-08-30T08:39:29.467469+00:00.