{"adoption": {"forks": 197, "observed_at": "2026-08-28T04:03:28.992787+00:00", "stars": 1074}, "canonical_url": "https://ross.abutalabs.com/products/tbtools-ii", "card": {"archived": false, "artifact_type": "application", "description": "GUI/CommandLine Tool Box for biologistists to utilize NGS data.", "domain": ["bioinformatics", "data-science", "data-visualization"], "enriched": true, "function": ["data-visualization", "nlp", "parser", "developer-tools"], "health_score": 97, "homepage": null, "language": "Shell", "license": null, "license_family": "other", "maturity": "active", "member_repos": ["CJ-Chen/TBtools-II"], "name": "CJ-Chen/TBtools-II", "platform": ["cross-platform", "windows", "cli"], "pushed_at": "2026-08-03T01:15:16+00:00", "repo": "CJ-Chen/TBtools-II", "stars": 1074, "tags": ["bioinformatics", "ngs", "genomics", "gui", "java", "sequence-analysis", "heatmap", "gene-set-enrichment", "macos", "linux"], "topics": [], "urls": [], "use_cases": ["analyze ngs sequencing data without coding", "draw heatmaps and venn diagrams for gene data", "bulk extract sequences from fasta files", "run gene set enrichment analysis", "visualize comparative genomics data", "bioinformatics toolkit for wet-lab biologists"], "what_it_is": "TBtools-II is a stand-alone bioinformatics platform with a user-friendly GUI and command-line tools for analyzing high-throughput sequencing (NGS) data. It bundles a large collection of functions for bulk sequence processing, enrichment analysis, and interactive biological data visualization.", "when_to_avoid": ["you need a scriptable, pipeline-oriented workflow for large-scale production analysis", "you require an open-source license for commercial use (license is non-commercial)", "you need cutting-edge specialized pipelines better served by dedicated tools"], "when_to_choose": ["you are a biologist without programming experience who needs to analyze sequencing data", "you want one integrated tool for routine bioinformatics tasks and plotting", "you need a cross-platform tool that runs anywhere Java runs"]}, "data_as_of": "2026-08-30T08:39:29.467469+00:00", "members": [{"path": "/products/tbtools-ii", "repo": "CJ-Chen/TBtools-II", "role": "main", "score": 92}], "provenance": {"archived": {"kind": "observed", "observed_at": "2026-08-28T04:03:28.992787+00:00", "source": "github"}, "artifact_type": {"confidence": null, "enriched_at": "2026-08-30T06:53:29.452710+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "dbc97b0913d7f6eaf2661136679507cdc21b981b0cbf5d9e96be055324bced13", "fetched_at": "2026-08-28T04:03:28.992787+00:00", "kind": "readme", "missing": false, "url": "https://github.com/CJ-Chen/TBtools-II"}], "taxonomy_version": 1}, "description": {"kind": "observed", "observed_at": "2026-08-28T04:03:28.992787+00:00", "source": "github"}, "domain": {"confidence": null, "enriched_at": "2026-08-30T06:53:29.452710+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "dbc97b0913d7f6eaf2661136679507cdc21b981b0cbf5d9e96be055324bced13", "fetched_at": "2026-08-28T04:03:28.992787+00:00", "kind": "readme", "missing": false, "url": "https://github.com/CJ-Chen/TBtools-II"}], "taxonomy_version": 1}, "enriched": {"inputs": [], "kind": "computed", "method": "enrichment_status"}, "function": {"confidence": null, "enriched_at": "2026-08-30T06:53:29.452710+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "dbc97b0913d7f6eaf2661136679507cdc21b981b0cbf5d9e96be055324bced13", "fetched_at": "2026-08-28T04:03:28.992787+00:00", "kind": "readme", "missing": false, "url": "https://github.com/CJ-Chen/TBtools-II"}], "taxonomy_version": 1}, "health_score": {"inputs": ["days_since_push", "days_since_release", "archived"], "kind": "computed", "method": "health_v1"}, "homepage": {"kind": "observed", "observed_at": "2026-08-28T04:03:28.992787+00:00", "source": "github"}, "language": {"kind": "observed", "observed_at": "2026-08-28T04:03:28.992787+00:00", "source": "github"}, "license": {"kind": "observed", "observed_at": "2026-08-28T04:03:28.992787+00:00", "source": "github"}, "license_family": {"inputs": ["license"], "kind": "computed", "method": "license_family"}, "maturity": {"confidence": null, "enriched_at": "2026-08-30T06:53:29.452710+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "dbc97b0913d7f6eaf2661136679507cdc21b981b0cbf5d9e96be055324bced13", "fetched_at": "2026-08-28T04:03:28.992787+00:00", "kind": "readme", "missing": false, "url": "https://github.com/CJ-Chen/TBtools-II"}], "taxonomy_version": 1}, "member_repos": {"kind": "observed", "observed_at": "2026-08-28T04:03:28.992787+00:00", "source": "github"}, "name": {"kind": "observed", "observed_at": "2026-08-28T04:03:28.992787+00:00", "source": "github"}, "platform": {"confidence": null, "enriched_at": "2026-08-30T06:53:29.452710+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "dbc97b0913d7f6eaf2661136679507cdc21b981b0cbf5d9e96be055324bced13", "fetched_at": "2026-08-28T04:03:28.992787+00:00", "kind": "readme", "missing": false, "url": "https://github.com/CJ-Chen/TBtools-II"}], "taxonomy_version": 1}, "pushed_at": {"kind": "observed", "observed_at": "2026-08-28T04:03:28.992787+00:00", "source": "github"}, "repo": {"kind": "observed", "observed_at": "2026-08-28T04:03:28.992787+00:00", "source": "github"}, "stars": {"kind": "observed", "observed_at": "2026-08-28T04:03:28.992787+00:00", "source": "github"}, "tags": {"confidence": null, "enriched_at": "2026-08-30T06:53:29.452710+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "dbc97b0913d7f6eaf2661136679507cdc21b981b0cbf5d9e96be055324bced13", "fetched_at": "2026-08-28T04:03:28.992787+00:00", "kind": "readme", "missing": false, "url": "https://github.com/CJ-Chen/TBtools-II"}], "taxonomy_version": 1}, "topics": {"kind": "observed", "observed_at": "2026-08-28T04:03:28.992787+00:00", "source": "github"}, "urls": {"kind": "observed", "observed_at": "2026-08-28T04:03:28.992787+00:00", "source": "github"}, "use_cases": {"confidence": null, "enriched_at": "2026-08-30T06:53:29.452710+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "dbc97b0913d7f6eaf2661136679507cdc21b981b0cbf5d9e96be055324bced13", "fetched_at": "2026-08-28T04:03:28.992787+00:00", "kind": "readme", "missing": false, "url": "https://github.com/CJ-Chen/TBtools-II"}], "taxonomy_version": 1}, "what_it_is": {"confidence": null, "enriched_at": "2026-08-30T06:53:29.452710+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "dbc97b0913d7f6eaf2661136679507cdc21b981b0cbf5d9e96be055324bced13", "fetched_at": "2026-08-28T04:03:28.992787+00:00", "kind": "readme", "missing": false, "url": "https://github.com/CJ-Chen/TBtools-II"}], "taxonomy_version": 1}, "when_to_avoid": {"confidence": null, "enriched_at": "2026-08-30T06:53:29.452710+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "dbc97b0913d7f6eaf2661136679507cdc21b981b0cbf5d9e96be055324bced13", "fetched_at": "2026-08-28T04:03:28.992787+00:00", "kind": "readme", "missing": false, "url": "https://github.com/CJ-Chen/TBtools-II"}], "taxonomy_version": 1}, "when_to_choose": {"confidence": null, "enriched_at": "2026-08-30T06:53:29.452710+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "dbc97b0913d7f6eaf2661136679507cdc21b981b0cbf5d9e96be055324bced13", "fetched_at": "2026-08-28T04:03:28.992787+00:00", "kind": "readme", "missing": false, "url": "https://github.com/CJ-Chen/TBtools-II"}], "taxonomy_version": 1}}, "score": {"components": {"activity": 95, "longevity": 100, "rhythm": 84}, "computed_at": "2026-09-03T02:20:16.233290+00:00", "flags": ["no_license"], "formula": "round(0.45*activity + 0.35*rhythm + 0.20*longevity); archived -> min(score, 10)", "inputs": {"age_days": 3799, "days_push": 31, "days_rel": 31, "gap_med": 34, "n_releases_24m": 18}, "score": 92, "version": 2}, "staleness": {"enrichment_outdated": false, "low_confidence": false, "scrape_days": 9, "stale_scrape": false}}