ncbi/sra-tools

Health v2 · maintenance only

Flags: no_releases no_license

Adoption not part of the score

1362 stars · 278 forks observed · 2026-08-28

What it is AI-extracted, prompt v1, taxonomy v1, 2026-08-30, confidence not recorded

The NCBI SRA Toolkit is a collection of command-line tools and libraries for accessing, converting, and downloading data from the INSDC Sequence Read Archive. It includes utilities like fasterq-dump and prefetch for retrieving sequencing reads into standard formats.

Use cases

• download sequencing reads from SRA
• convert SRA files to FASTQ
• fetch SRA run data for bioinformatics analysis
• access NCBI Sequence Read Archive programmatically
• extract reads from SRA archives into FASTA

When to choose

• you need to download or convert data from NCBI's Sequence Read Archive
• you're building genomics pipelines that consume public sequencing data
• you want the official, maintained NCBI tooling for SRA access

When to avoid

• you need to upload data to SRA via cloud pipelines (consider other NCBI submission tools)
• you want a high-level genomics library rather than data access utilities
• you need a permissively licensed library - the license is a custom public-domain-style notice

Facets

cli-tool · maturity active

cli sdk file-system developer-tools bioinformatics windows cpp python genomics sequencing-data fasterq-dump prefetch ncbi sequence-read-archive data-engineering command-line linux macos

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markdown · JSON · MCP: product_card(name="ncbi/sra-tools")