{"adoption": {"forks": 147, "observed_at": "2026-09-03T02:15:15.652694+00:00", "stars": 1193}, "canonical_url": "https://ross.abutalabs.com/products/omicverse", "card": {"archived": false, "artifact_type": "library", "description": "A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.", "domain": ["bioinformatics", "data-science", "machine-learning"], "enriched": true, "function": ["data-science", "machine-learning", "data-visualization"], "health_score": 100, "homepage": "https://omicverse.readthedocs.io/en/latest/", "language": "Python", "license": "GPL-3.0", "license_family": "copyleft", "maturity": "active", "member_repos": ["omicverse/omicverse"], "name": "omicverse/omicverse", "platform": ["python"], "pushed_at": "2026-09-02T11:31:46+00:00", "repo": "omicverse/omicverse", "stars": 1193, "tags": ["omics", "single-cell", "bulk-rna-seq", "spatial-transcriptomics", "scverse", "genomics", "multi-omics"], "topics": ["bioinformatics", "omics", "bulk-rna-seq", "single-cell"], "urls": [], "use_cases": ["analyze single-cell rna-seq data in python", "bulk rna-seq differential expression analysis", "spatial transcriptomics analysis", "multi-omics integration pipeline", "cluster and annotate single-cell data", "process scRNA-seq count matrices"], "what_it_is": "OmicVerse is a Python library for multi-omics analysis covering bulk, single-cell, and spatial RNA-seq workflows. It is part of the scverse ecosystem and provides an integrated toolkit for transcriptomic data analysis.", "when_to_avoid": ["you only need a lightweight single-purpose tool for one narrow analysis step", "your workflow is R/Seurat-based and you prefer Bioconductor packages", "GPL-3.0 licensing is incompatible with your project"], "when_to_choose": ["you need a unified Python toolkit spanning bulk, single-cell, and spatial transcriptomics", "you want scverse-ecosystem compatibility (AnnData/scanpy-style workflows)", "you need published, actively maintained omics analysis methods in one library"]}, "data_as_of": "2026-08-30T08:39:29.467469+00:00", "members": [{"path": "/products/omicverse", "repo": "omicverse/omicverse", "role": "main", "score": 94}], "provenance": {"archived": {"kind": "observed", "observed_at": "2026-09-03T02:15:15.652694+00:00", "source": "github"}, "artifact_type": {"confidence": null, "enriched_at": "2026-08-30T06:23:05.345181+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "f87c56c60f1ace1e6845d2c126bb70085f3544ca5c41564ef155c92cd0697318", "fetched_at": "2026-09-03T02:15:15.652694+00:00", "kind": "readme", "missing": false, "url": "https://github.com/omicverse/omicverse"}], "taxonomy_version": 1}, "description": {"kind": "observed", "observed_at": "2026-09-03T02:15:15.652694+00:00", "source": "github"}, "domain": {"confidence": null, "enriched_at": "2026-08-30T06:23:05.345181+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "f87c56c60f1ace1e6845d2c126bb70085f3544ca5c41564ef155c92cd0697318", "fetched_at": "2026-09-03T02:15:15.652694+00:00", "kind": "readme", "missing": false, "url": "https://github.com/omicverse/omicverse"}], "taxonomy_version": 1}, "enriched": {"inputs": [], "kind": "computed", "method": "enrichment_status"}, "function": {"confidence": null, "enriched_at": "2026-08-30T06:23:05.345181+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "f87c56c60f1ace1e6845d2c126bb70085f3544ca5c41564ef155c92cd0697318", "fetched_at": "2026-09-03T02:15:15.652694+00:00", "kind": "readme", "missing": false, "url": "https://github.com/omicverse/omicverse"}], "taxonomy_version": 1}, "health_score": {"inputs": ["days_since_push", "days_since_release", "archived"], "kind": "computed", "method": "health_v1"}, "homepage": {"kind": "observed", "observed_at": "2026-09-03T02:15:15.652694+00:00", "source": "github"}, "language": {"kind": "observed", "observed_at": "2026-09-03T02:15:15.652694+00:00", "source": "github"}, "license": {"kind": "observed", "observed_at": "2026-09-03T02:15:15.652694+00:00", "source": "github"}, "license_family": {"inputs": ["license"], "kind": "computed", "method": "license_family"}, "maturity": {"confidence": null, "enriched_at": "2026-08-30T06:23:05.345181+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "f87c56c60f1ace1e6845d2c126bb70085f3544ca5c41564ef155c92cd0697318", "fetched_at": "2026-09-03T02:15:15.652694+00:00", "kind": "readme", "missing": false, "url": "https://github.com/omicverse/omicverse"}], "taxonomy_version": 1}, "member_repos": {"kind": "observed", "observed_at": "2026-09-03T02:15:15.652694+00:00", "source": "github"}, "name": {"kind": "observed", "observed_at": "2026-09-03T02:15:15.652694+00:00", "source": "github"}, "platform": {"confidence": null, "enriched_at": "2026-08-30T06:23:05.345181+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "f87c56c60f1ace1e6845d2c126bb70085f3544ca5c41564ef155c92cd0697318", "fetched_at": "2026-09-03T02:15:15.652694+00:00", "kind": "readme", "missing": false, "url": "https://github.com/omicverse/omicverse"}], "taxonomy_version": 1}, "pushed_at": {"kind": "observed", "observed_at": "2026-09-03T02:15:15.652694+00:00", "source": "github"}, "repo": {"kind": "observed", "observed_at": "2026-09-03T02:15:15.652694+00:00", "source": "github"}, "stars": {"kind": "observed", "observed_at": "2026-09-03T02:15:15.652694+00:00", "source": "github"}, "tags": {"confidence": null, "enriched_at": "2026-08-30T06:23:05.345181+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "f87c56c60f1ace1e6845d2c126bb70085f3544ca5c41564ef155c92cd0697318", "fetched_at": "2026-09-03T02:15:15.652694+00:00", "kind": "readme", "missing": false, "url": "https://github.com/omicverse/omicverse"}], "taxonomy_version": 1}, "topics": {"kind": "observed", "observed_at": "2026-09-03T02:15:15.652694+00:00", "source": "github"}, "urls": {"kind": "observed", "observed_at": "2026-09-03T02:15:15.652694+00:00", "source": "github"}, "use_cases": {"confidence": null, "enriched_at": "2026-08-30T06:23:05.345181+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "f87c56c60f1ace1e6845d2c126bb70085f3544ca5c41564ef155c92cd0697318", "fetched_at": "2026-09-03T02:15:15.652694+00:00", "kind": "readme", "missing": false, "url": "https://github.com/omicverse/omicverse"}], "taxonomy_version": 1}, "what_it_is": {"confidence": null, "enriched_at": "2026-08-30T06:23:05.345181+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "f87c56c60f1ace1e6845d2c126bb70085f3544ca5c41564ef155c92cd0697318", "fetched_at": "2026-09-03T02:15:15.652694+00:00", "kind": "readme", "missing": false, "url": "https://github.com/omicverse/omicverse"}], "taxonomy_version": 1}, "when_to_avoid": {"confidence": null, "enriched_at": "2026-08-30T06:23:05.345181+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "f87c56c60f1ace1e6845d2c126bb70085f3544ca5c41564ef155c92cd0697318", "fetched_at": "2026-09-03T02:15:15.652694+00:00", "kind": "readme", "missing": false, "url": "https://github.com/omicverse/omicverse"}], "taxonomy_version": 1}, "when_to_choose": {"confidence": null, "enriched_at": "2026-08-30T06:23:05.345181+00:00", "kind": "inferred", "prompt_version": 1, "sources": [{"content_hash": "f87c56c60f1ace1e6845d2c126bb70085f3544ca5c41564ef155c92cd0697318", "fetched_at": "2026-09-03T02:15:15.652694+00:00", "kind": "readme", "missing": false, "url": "https://github.com/omicverse/omicverse"}], "taxonomy_version": 1}}, "score": {"components": {"activity": 100, "longevity": 100, "rhythm": 83}, "computed_at": "2026-09-03T02:20:16.233290+00:00", "flags": [], "formula": "round(0.45*activity + 0.35*rhythm + 0.20*longevity); archived -> min(score, 10)", "inputs": {"age_days": 1990, "days_push": 0, "days_rel": 36, "gap_med": 32, "n_releases_24m": 16}, "score": 94, "version": 2}, "staleness": {"enrichment_outdated": false, "low_confidence": false, "scrape_days": 3, "stale_scrape": false}}