# bxx2004/FUNGA

This is a database project.

Repository: https://github.com/bxx2004/FUNGA
Canonical: https://ross.abutalabs.com/products/funga
Language: Kotlin
License: AGPL-3.0
License Family: copyleft
Last push: 2026-01-04T03:59:23+00:00

## Health v2 (maintenance only)
Score: 38/100 (v2, computed 2026-09-02T17:46:02.011165+00:00)
- activity 60, release rhythm 8, longevity 42
- inputs: {"age_days": 599, "days_push": 241, "days_rel": 400, "gap_med": null, "n_releases_24m": 1}
- flags: none
- formula: round(0.45*activity + 0.35*rhythm + 0.20*longevity); archived -> min(score, 10)

## Adoption (not part of the score)
Stars 1020, forks 102 (observed 2026-08-28T04:03:15.247322+00:00)

## What it is
FUNGA (Functional Gene Annotation Exploitation Platform) is an AI-powered web platform for mining gene functions, integrating cross-species genetic data from animals, plants, and fungi with private datasets. It offers gene retrieval, gene-gene interaction networks, GO/PO phenotype matching, LLM-based summarization, and an AI assistant, built on the Kotlin Ktor stack and primarily provided as an online service with optional local deployment.

## Use cases
- annotate gene functions using AI
- search genetic information across species
- query gene-gene interaction networks
- match genes to GO and PO ontology terms
- mine genes associated with a phenotype
- summarize gene analysis results with a large language model
- run sequence alignment for plant or fungal genes

## When to choose
- You need cross-species gene function annotation and retrieval in a single web platform
- You want LLM-assisted summaries and ranking of gene-phenotype mining results
- You need integrated GO/PO matching, interaction network analysis, and sequence tools for plant or fungal research

## When to avoid
- You need fully offline analysis with no server deployment
- You require raw bulk database exports rather than an online query platform
- Your work is outside gene function and phenotype analysis

## Facets
- artifact type: service
- maturity: active
- function: database, search-engine, machine-learning, llm-inference, chatbot, data-visualization
- domain: bioinformatics, artificial-intelligence, large-language-models, databases
- platform: self-hosted, jvm, cloud
- tags: bioinformatics, genomics, gene-annotation, gene-interaction-networks, gene-ontology, plant-ontology, phenotype-mining, sequence-alignment, ktor, kotlin, cross-species, agpl, search, web-server

## Member repositories
- bxx2004/FUNGA (main) score 38

## Provenance
- Observed fields: from GitHub, fetched 2026-08-28T04:03:15.247322+00:00.
- Health v2: computed from the inputs above; adoption is never an input.
- Inferred fields (summary, facets, guidance): AI-extracted, prompt v1, taxonomy v1, on 2026-08-30T07:08:55.233558+00:00, confidence not recorded.
  - readme: https://github.com/bxx2004/FUNGA (fetched 2026-08-28T04:03:15.247322+00:00, sha f3d633e32279)
- Data as of 2026-08-30T08:39:29.467469+00:00.