# greenelab/deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

Repository: https://github.com/greenelab/deep-review
Canonical: https://ross.abutalabs.com/products/deep-review
Homepage: https://greenelab.github.io/deep-review/
Language: HTML
License: NOASSERTION
License Family: other
Topics: deep-learning, neural-networks, review, genomics, manuscript, manubot
Last push: 2022-12-25T00:01:13+00:00

## Health v2 (maintenance only)
Score: 23/100 (v2, computed 2026-09-03T02:20:16.233290+00:00)
- activity 0, release rhythm 8, longevity 100
- inputs: {"age_days": 3683, "days_push": 1348, "days_rel": null, "gap_med": null, "n_releases_24m": 0}
- flags: no_license
- formula: round(0.45*activity + 0.35*rhythm + 0.20*longevity); archived -> min(score, 10)

## Adoption (not part of the score)
Stars 1280, forks 270 (observed 2026-08-28T04:04:13.644989+00:00)

## What it is
A collaboratively written review paper on deep learning in genomics and precision medicine, authored on GitHub using the Manubot toolchain. The repository contains the manuscript source and automated build pipeline that renders the article as HTML and PDF.

## Use cases
- read a review of deep learning in biology and medicine
- cite a survey on deep learning for genomics and precision medicine
- contribute to an open collaborative manuscript on GitHub
- learn how to write a paper with Manubot
- find references on deep learning applications in medicine

## When to choose
- you need a comprehensive, citable survey of deep learning in biology and medicine
- you want an example of open, collaborative manuscript writing with Manubot
- you want to contribute to or follow the version 2.0 update

## When to avoid
- you need runnable deep learning code or a software library
- you want a finished, finalized paper rather than a work-in-progress update
- you need a tool rather than a document

## Facets
- artifact type: learning-resource
- maturity: maintenance
- function: documentation, machine-learning
- domain: bioinformatics, deep-learning, healthcare, tutorials
- platform: python
- tags: manubot, review-paper, precision-medicine, genomics, collaborative-writing, open-science, web-server

## Member repositories
- greenelab/deep-review (main) score 23

## Provenance
- Observed fields: from GitHub, fetched 2026-08-28T04:04:13.644989+00:00.
- Health v2: computed from the inputs above; adoption is never an input.
- Inferred fields (summary, facets, guidance): AI-extracted, prompt v1, taxonomy v1, on 2026-08-30T05:02:37.436391+00:00, confidence not recorded.
  - readme: https://github.com/greenelab/deep-review (fetched 2026-08-28T04:04:13.644989+00:00, sha 2423f0e86c1e)
  - homepage: https://greenelab.github.io/deep-review/ (fetched 2026-08-29T12:13:08.568667+00:00, sha 770e0aa87317)
- Data as of 2026-08-30T08:39:29.467469+00:00.